PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880768
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 861aa    MW: 94765.2 Da    PI: 8.1385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880768genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18356455198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+++
  462880768 356 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVSGKDWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLVMGF 453
                89**************************555566778***************9989999999***9.********************987.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  462880768 454 RK 455
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-19353455IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-29353458IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-22354455No hitNo description
PROSITE profilePS5086311.039356457IPR003340B3 DNA binding domain
SMARTSM010198.5E-21356456IPR003340B3 DNA binding domain
PfamPF023621.5E-15356455IPR003340B3 DNA binding domain
PROSITE profilePS5105014.202611661IPR011124Zinc finger, CW-type
PfamPF074961.7E-10616658IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MAPTGSTWSD RHVGAISLDT RGFEQGIYCE TFHSEEGGWR NCETCGRRVH CGCIVSIHKY  60
QLRDAGGVDC AKCARNTRTA MAPPNPVWSP SMHVPQNVPD RKDNPVKTWR PPAGQISSQW  120
RQTNMWSVSS VQSDLQQRLA FEFDRPSGSE KLLPGRTFIQ AHERKFDDMH DRPTTPASMN  180
HLMRERDANG QPATLDPSYP YALYHREGPH PNCVNDPSHH GGENERRMAV PDASTGLDAG  240
FKHDSHHPSL LKDDQPSLSV GLPSNFASAN GPKDHIRIAP NQQQAQMASP PVPKTFYTMG  300
GKAYTYNDFP HQMSNGRPRM DAKARSQLLP RYWPRISDQE LQHLSGDSHS VVTPLFEKML  360
SASDAGRIGR LVLPKKCAEA YFPPISQPEG LPLKVQDVSG KDWIFQFRFW PNNNSRMYVL  420
EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS SEQEQTTKPA NGAPASSEAN  480
GKVSAPDSSP NAAVSRQNKV NTENNSSSPV EQPSASKMDK GGSSQKDGPG TGQSSPGPGK  540
RKATSVGQKI KRLRMDNEES MELKITWEEA QELLRPPPKA PSIVVVEGHE FEEYEEPPIL  600
GRKTYLVADK SGTTHQWAQC EDCSKWRKLP ADVLMPSKWT CSDNKRDPER SSCESVQEIS  660
MEELAELIPI KYGPGAKKLK GKIDPDTIDA SDGLDTLANL AILGEGEAIP SQPTTKHPRH  720
RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKRKDTD SPRKKEAGQS  780
SEAVSRAGSV PPAATGASTT SSPQKADPNA DGPEDMAVDH KMTSSPVKNH IDLNIQPDRD  840
DEQSPKADAA GATRLLRDNP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1335544213102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1762774REKRKDTDSPRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460861.10.0hypothetical protein SORBIDRAFT_02g036430
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLC5XBK70.0C5XBK7_SORBI; Putative uncharacterized protein Sb02g036430
STRINGSb02g036430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-144high-level expression of sugar-inducible gene 2